About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_52258912_52259125_R

Intron Information:

Intron Rank:
21
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
52258912 - 52259125
Intron Length:
214

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGTGGG
5'SS Class:
strong_major
3'SS Sequence:
CCTGCAGGAGAAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
CGCTGAC
U12 Branch Point Sequence:
TCTCCCTGCAGG
Flanking Amino Acid:
QDWELPIKREEKKPLKEGVQ
Intron Amino Acid Position:
747

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89
0.92
0.8
72.2
39.5
Major BPS
53.9
0.1
1.2
46.4
38.9
Major PPT
46.7
-0.1
1.1
41.7
36.4
Minor 5ss
26.6
-2.7
3
31.5
42.8
Minor BPS
44.7
-0.5
2.2
53.41
47.1

Associated Gene:

Gene:
SGSM3
Ensembl Gene ID:
ENSAPLG00000014613
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015268
52258834 - 52270932
12099