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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_52259187_52259843_R

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
52259187 - 52259843
Intron Length:
657

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGTCTG
5'SS Class:
strong_major
3'SS Sequence:
CCTTCCCTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GCCTGAG
U12 Branch Point Sequence:
TGTGCCTGAGCG
Flanking Amino Acid:
PGWVQIKCELRVLCKFAFSL
Intron Amino Acid Position:
726

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.5
0.95
0.8
77.8
38.7
Major BPS
44.9
-0.3
1.6
39
42.9
Major PPT
82
0.72
0.7
73
31.9
Minor 5ss
32.4
-2
3
40.4
45.7
Minor BPS
50.8
-0.1
1.9
61.32
46

Associated Gene:

Gene:
SGSM3
Ensembl Gene ID:
ENSAPLG00000014613
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015268
52258834 - 52270932
12099