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Intron Name: Anas_platyrhynchos_platyrhynchos_1_52259967_52260205_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

52259967 - 52260205

Intron Length:

239

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAA|GTGAGTCAC

5'SS Class:

strong_major

3'SS Sequence:

CCCCTCGCCGCAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

AAGTAAC

U12 Branch Point Sequence:

CGTGCCTCCACC

Flanking Amino Acid:

KLRSLICVGLNEQVLHLWLE

Intron Amino Acid Position:

685

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

80.1

0.71

0.9

71.2

34.5

Major BPS

57.9

0.2

1.1

59.4

34.8

Major PPT

66.8

0.38

0.8

60.3

29.5

Minor 5ss

30.8

-2.2

2.9

35.8

34.5

Minor BPS

47.4

-0.2

2.1

59.01

45.8

Associated Gene:

Gene:

SGSM3

Ensembl Gene ID:

ENSAPLG00000014613

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000015268

52258834 - 52270932

12099