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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_52260292_52260586_R

Intron Information:

Intron Rank:
18
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
52260292 - 52260586
Intron Length:
295

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTGAGCGCT
5'SS Class:
major
3'SS Sequence:
TCCTGCCCTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACCACAT
U12 Branch Point Sequence:
GTAACCACATCT
Flanking Amino Acid:
VLTPEELLYRAVQAVNMTHD
Intron Amino Acid Position:
657

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.8
0.61
1
65.8
40.2
Major BPS
56.3
0.16
1
62.9
34.3
Major PPT
75.5
0.57
0.8
65.7
36.1
Minor 5ss
33.1
-1.9
3.4
39.6
45.9
Minor BPS
44.6
-0.3
2
64.48
44.8

Associated Gene:

Gene:
SGSM3
Ensembl Gene ID:
ENSAPLG00000014613
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015268
52258834 - 52270932
12099