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Intron Name: Anas_platyrhynchos_platyrhynchos_1_52260636_52260744_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

52260636 - 52260744

Intron Length:

109

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAAGGCCC

5'SS Class:

strong_major

3'SS Sequence:

GTCATCTTTTCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CTGTCAT

U12 Branch Point Sequence:

CTCCTCGTAGCT

Flanking Amino Acid:

YSRLVLCKTYRLDEDGKVLT

Intron Amino Acid Position:

640

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

87.6

0.89

0.9

71.3

37.2

Major BPS

72.5

0.56

1.2

39.9

Major PPT

80.2

0.68

0.9

76.8

37.2

Minor 5ss

-2.1

3.3

42.6

44.4

Minor BPS

45.4

-0.2

2.2

64.32

46.3

Associated Gene:

Gene:

SGSM3

Ensembl Gene ID:

ENSAPLG00000014613

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000015268

52258834 - 52270932

12099