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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_52261060_52261582_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
52261060 - 52261582
Intron Length:
523

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAATTAAA
5'SS Class:
strong_major
3'SS Sequence:
TGGTGCTCCTCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTGCAC
U12 Branch Point Sequence:
TTGCACTGAGCT
Flanking Amino Acid:
VEILDERSKEYSIAGDDSVT
Intron Amino Acid Position:
566

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.6
0.89
0.9
85.1
25.8
Major BPS
56.3
0.16
1.4
69.1
37.9
Major PPT
69.8
0.45
0.9
66
40.8
Minor 5ss
35.1
-1.7
2.7
42.4
44.3
Minor BPS
49.1
0.02
1.9
71.96
44.1

Associated Gene:

Gene:
SGSM3
Ensembl Gene ID:
ENSAPLG00000014613
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015268
52258834 - 52270932
12099