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Intron Name: Anas_platyrhynchos_platyrhynchos_1_52261633_52261917_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

52261633 - 52261917

Intron Length:

285

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTGAGAGCA

5'SS Class:

strong_major

3'SS Sequence:

CCGTCCTTTGTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CGTTTAT

U12 Branch Point Sequence:

TTAGGCTCACCT

Flanking Amino Acid:

CWVGELNGLRGWFPAKFVEI

Intron Amino Acid Position:

549

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

86.3

0.86

0.8

73.9

29.7

Major BPS

0.47

1.2

61.1

45.5

Major PPT

74.4

0.55

0.8

68.9

31.5

Minor 5ss

25.3

-2.8

3.1

30.4

42.9

Minor BPS

45.7

-0.2

2.3

68.76

47.7

Associated Gene:

Gene:

SGSM3

Ensembl Gene ID:

ENSAPLG00000014613

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000015268

52258834 - 52270932

12099