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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_52266991_52267405_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
52266991 - 52267405
Intron Length:
415

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAACTCCT
5'SS Class:
strong_major
3'SS Sequence:
GGCATCATTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AAATGAT
U12 Branch Point Sequence:
GTGTGGTAAAAT
Flanking Amino Acid:
QLTLGMLSMKEDELIQSENS
Intron Amino Acid Position:
321

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.7
0.75
1.1
75.3
40.8
Major BPS
68
0.45
1
57.8
39
Major PPT
67
0.38
1
58.6
41.7
Minor 5ss
42.4
-0.8
2.9
60.3
44
Minor BPS
40.7
-0.6
2.6
61.41
48

Associated Gene:

Gene:
SGSM3
Ensembl Gene ID:
ENSAPLG00000014613
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015268
52258834 - 52270932
12099