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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_52267552_52267776_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
52267552 - 52267776
Intron Length:
225

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTAAAAATG
5'SS Class:
major
3'SS Sequence:
TCTCTACTCACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCGTGAT
U12 Branch Point Sequence:
TGTGTCTCTACT
Flanking Amino Acid:
LDKLLQEHDIELSLITLHWF
Intron Amino Acid Position:
272

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.9
0.56
1
69.2
41.5
Major BPS
68.7
0.46
1.3
59.3
47.1
Major PPT
78.7
0.65
0.8
72.6
31
Minor 5ss
36.9
-1.5
3.2
49.9
46.2
Minor BPS
49.6
0.05
2
72.67
44

Associated Gene:

Gene:
SGSM3
Ensembl Gene ID:
ENSAPLG00000014613
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015268
52258834 - 52270932
12099