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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_52267973_52268378_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
52267973 - 52268378
Intron Length:
406

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGTTGC
5'SS Class:
strong_major
3'SS Sequence:
CTTCAAATCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCAAAT
U12 Branch Point Sequence:
CTTCCTTCAAAT
Flanking Amino Acid:
EIGYCQGTGMVAASLLLFLE
Intron Amino Acid Position:
207

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.9
0.78
0.9
71
35.7
Major BPS
77.3
0.68
1
81.5
27
Major PPT
69
0.43
0.9
59
40.5
Minor 5ss
35.2
-1.7
2.8
40.6
40.8
Minor BPS
57.3
0.31
1.7
75.04
41.5

Associated Gene:

Gene:
SGSM3
Ensembl Gene ID:
ENSAPLG00000014613
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015268
52258834 - 52270932
12099