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Intron Name: Anas_platyrhynchos_platyrhynchos_1_52268949_52269075_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

52268949 - 52269075

Intron Length:

127

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTGAGAGCG

5'SS Class:

strong_major

3'SS Sequence:

TCTCCCTGTTCAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

AGGTTAT

U12 Branch Point Sequence:

TGGCTCTCAGTG

Flanking Amino Acid:

AGIPHSMRPQLWMRLSGALQ

Intron Amino Acid Position:

123

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

84.8

0.82

0.9

68.6

36.5

Major BPS

57.4

0.18

1.3

49.2

Major PPT

78.5

0.64

0.9

76.5

32.1

Minor 5ss

25.3

-2.8

3.1

30.1

43.1

Minor BPS

-0.5

1.7

45.5

41.2

Associated Gene:

Gene:

SGSM3

Ensembl Gene ID:

ENSAPLG00000014613

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000015268

52258834 - 52270932

12099