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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_52270081_52270730_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
52270081 - 52270730
Intron Length:
650

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACGGCAC
5'SS Class:
major
3'SS Sequence:
CTCACGCCCCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTCAC
U12 Branch Point Sequence:
CCTTCCTCACGC
Flanking Amino Acid:
PQEILAKYTQKEEAIEQPEF
Intron Amino Acid Position:
31

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.6
0.68
1
64.1
42.1
Major BPS
72.4
0.56
1
73.5
32.5
Major PPT
64.3
0.32
0.9
53.8
36.5
Minor 5ss
30
-2.3
3.4
41
45.6
Minor BPS
46.7
-0.2
2.1
57.89
47.1

Associated Gene:

Gene:
SGSM3
Ensembl Gene ID:
ENSAPLG00000014613
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015268
52258834 - 52270932
12099