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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_52278663_52280888_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
52278663 - 52280888
Intron Length:
2226

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACAAATG
5'SS Class:
major
3'SS Sequence:
CCTGCTCCTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
ACTTTTTCATTT
Flanking Amino Acid:
AMVKAGGNRQDCHEKIRVLS
Intron Amino Acid Position:
399

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.4
0.55
1.1
69
41.8
Major BPS
100
1.24
0.5
100
0
Major PPT
76.1
0.59
0.8
69.2
31.4
Minor 5ss
35.4
-1.7
3.3
48.6
47.1
Minor BPS
48.4
-0
1.7
65.38
40.3

Associated Gene:

Gene:
ADSL
Ensembl Gene ID:
ENSAPLG00000008986
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009405
52278066 - 52298508
20443