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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_52281626_52283365_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
52281626 - 52283365
Intron Length:
1740

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTTGTTCA
5'SS Class:
major
3'SS Sequence:
GTCTGCTTCCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
TTATTGCTAACT
Flanking Amino Acid:
FERTLDDSANRRVCLAEAFL
Intron Amino Acid Position:
338

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.9
0.61
1.1
71.5
34.4
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
69.9
0.45
0.9
61.5
40
Minor 5ss
42.9
-0.8
2.4
51.4
45
Minor BPS
53.6
0.19
2.3
81.18
40.3

Associated Gene:

Gene:
ADSL
Ensembl Gene ID:
ENSAPLG00000008986
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009405
52278066 - 52298508
20443