About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_52284524_52289895_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
52284524 - 52289895
Intron Length:
5372

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGCCCC
5'SS Class:
strong_major
3'SS Sequence:
GCTTTTTTTCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTAAT
U12 Branch Point Sequence:
TGTTTGTTAATT
Flanking Amino Acid:
LASLGASVHKICTDIRLLAN
Intron Amino Acid Position:
266

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.8
0.77
0.9
65.8
40.2
Major BPS
84.4
0.85
1
84
34.5
Major PPT
83.8
0.76
0.8
76.9
37.3
Minor 5ss
33.7
-1.9
3
42.6
44.4
Minor BPS
65.1
0.55
2
83.97
37.3

Associated Gene:

Gene:
ADSL
Ensembl Gene ID:
ENSAPLG00000008986
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009405
52278066 - 52298508
20443