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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_52289987_52290396_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
52289987 - 52290396
Intron Length:
410

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTATGTAAC
5'SS Class:
strong_major
3'SS Sequence:
TGCTCATTTCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTTAAT
U12 Branch Point Sequence:
ATGTCCAGAACA
Flanking Amino Acid:
RLVTEKAGFKRSYMVTGQTY
Intron Amino Acid Position:
235

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80
0.71
1
74.4
35.9
Major BPS
81.8
0.79
1.1
84
34.5
Major PPT
74.6
0.55
0.9
66.2
39.8
Minor 5ss
42.6
-0.8
2.6
54.6
42.8
Minor BPS
59.6
0.3
1.8
72.17
39.2

Associated Gene:

Gene:
ADSL
Ensembl Gene ID:
ENSAPLG00000008986
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009405
52278066 - 52298508
20443