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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_52292942_52293752_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
52292942 - 52293752
Intron Length:
811

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGAAGG
5'SS Class:
strong_major
3'SS Sequence:
CCGCATCCACCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
TCTTTTCTATCC
Flanking Amino Acid:
RDGLNLLLPQLARVISRLAD
Intron Amino Acid Position:
136

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.6
0.84
0.9
71.5
40.2
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
60.2
0.23
1
51.3
37.7
Minor 5ss
27.4
-2.6
2.7
31.3
42.4
Minor BPS
49.8
-0
1.9
65.93
40.3

Associated Gene:

Gene:
ADSL
Ensembl Gene ID:
ENSAPLG00000008986
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009405
52278066 - 52298508
20443