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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_52295127_52298352_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
52295127 - 52298352
Intron Length:
3226

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAACGGGA
5'SS Class:
major
3'SS Sequence:
TTTCCCCTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTAAA
U12 Branch Point Sequence:
GGCAACAGAAAG
Flanking Amino Acid:
LWLFLAQAEKSLGLPITDEQ
Intron Amino Acid Position:
53

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.9
0.59
1.2
64
42.4
Major BPS
75.2
0.63
1.1
75.9
36.3
Major PPT
86.8
0.83
0.7
81.2
23.8
Minor 5ss
34.1
-1.8
3.6
47.1
48.3
Minor BPS
36.7
-1.1
1.8
34.71
38.2

Associated Gene:

Gene:
ADSL
Ensembl Gene ID:
ENSAPLG00000008986
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009405
52278066 - 52298508
20443