Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_52316091_52318850_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

52316091 - 52318850

Intron Length:

2760

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAAAATGT

5'SS Class:

strong_major

3'SS Sequence:

TTTAATCTTCTAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTAAT

U12 Branch Point Sequence:

TTTATTTTAATC

Flanking Amino Acid:

DHQLLRDNTTAKFSDYKSTW

Intron Amino Acid Position:

1526

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

82.1

0.76

0.9

74.9

36.1

Major BPS

99.5

1.23

0.5

98.2

4.2

Major PPT

78.8

0.65

0.9

70.5

40.7

Minor 5ss

-1.2

3.2

56.6

47.5

Minor BPS

0.7

1.1

78.22

31.1

Associated Gene:

Gene:

TNRC6B

Ensembl Gene ID:

ENSAPLG00000009347

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000032152

52312143 - 52427045

114903