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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_52318998_52321032_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
52318998 - 52321032
Intron Length:
2035

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATTACAT
5'SS Class:
major
3'SS Sequence:
CCTCCTGTCGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTAAC
U12 Branch Point Sequence:
CTGCATCTAACT
Flanking Amino Acid:
SKSSNASWPPEFQPGVPWKG
Intron Amino Acid Position:
1424

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.8
0.54
1
66.2
39.1
Major BPS
75.8
0.64
0.9
75.6
25.3
Major PPT
73.4
0.53
0.9
67.7
32.2
Minor 5ss
39.8
-1.1
3.1
56.6
47.5
Minor BPS
48.3
-0
1.9
66.96
43.6

Associated Gene:

Gene:
TNRC6B
Ensembl Gene ID:
ENSAPLG00000009347
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026826
52312143 - 52427045
114903
ENSAPLT00000023148
52312143 - 52427011
114869
ENSAPLT00000036322
52312143 - 52427011
114869
ENSAPLT00000017762
52312143 - 52387729
75587
ENSAPLT00000032152
52312143 - 52427045
114903
ENSAPLT00000009791
52312143 - 52427045
114903
ENSAPLT00000030062
52312143 - 52387729
75587