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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_52322922_52324017_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
52322922 - 52324017
Intron Length:
1096

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGAAT
5'SS Class:
strong_major
3'SS Sequence:
GATTTTCGTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTGAT
U12 Branch Point Sequence:
GTGTAATTGATT
Flanking Amino Acid:
QVPPQFLSPQVSASMLKQFP
Intron Amino Acid Position:
1186

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.5
1
0.8
87.7
27.9
Major BPS
79.8
0.74
0.9
69.4
37.7
Major PPT
75.4
0.57
1
69.8
41.2
Minor 5ss
33.9
-1.8
3.3
47.8
47.9
Minor BPS
50.2
0.09
1.8
70
40.9

Associated Gene:

Gene:
TNRC6B
Ensembl Gene ID:
ENSAPLG00000009347
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032152
52312143 - 52427045
114903
ENSAPLT00000026826
52312143 - 52427045
114903
ENSAPLT00000017762
52312143 - 52387729
75587
ENSAPLT00000009791
52312143 - 52427045
114903
ENSAPLT00000036322
52312143 - 52427011
114869