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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_52322922_52326390_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
52322922 - 52326390
Intron Length:
3469

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGCAGG
5'SS Class:
major
3'SS Sequence:
GATTTTCGTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTGAT
U12 Branch Point Sequence:
GTGTAATTGATT
Flanking Amino Acid:
LSPQNFAARQVSASMLKQFP
Intron Amino Acid Position:
1190

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.8
0.66
1
66.4
45.1
Major BPS
79.8
0.74
0.9
69.4
37.7
Major PPT
75.4
0.57
1
69.8
41.2
Minor 5ss
40.5
-1.1
2.9
49.1
41.3
Minor BPS
50.2
0.09
1.8
70
40.9

Associated Gene:

Gene:
TNRC6B
Ensembl Gene ID:
ENSAPLG00000009347
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030062
52312143 - 52387729
75587