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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_52322922_52327730_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
52322922 - 52327730
Intron Length:
4809

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGAGAA
5'SS Class:
strong_major
3'SS Sequence:
GATTTTCGTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTGAT
U12 Branch Point Sequence:
GTGTAATTGATT
Flanking Amino Acid:
TTDSGPYFEKVSASMLKQFP
Intron Amino Acid Position:
1169

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.1
0.87
0.8
76.5
26.8
Major BPS
79.8
0.74
0.9
69.4
37.7
Major PPT
75.4
0.57
1
69.8
41.2
Minor 5ss
24.3
-3
3.1
28.7
43.6
Minor BPS
50.2
0.09
1.8
70
40.9

Associated Gene:

Gene:
TNRC6B
Ensembl Gene ID:
ENSAPLG00000009347
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023148
52312143 - 52427011
114869