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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_52324144_52326390_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
52324144 - 52326390
Intron Length:
2247

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGCAGG
5'SS Class:
major
3'SS Sequence:
TTTAATTTTATAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTAAT
U12 Branch Point Sequence:
ACTGCTTTAATT
Flanking Amino Acid:
LSPQNFAARQGGNHGLFGNS
Intron Amino Acid Position:
1190

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.8
0.66
1
66.4
45.1
Major BPS
87.2
0.92
0.9
87.6
25.6
Major PPT
82.1
0.72
0.8
76.8
37
Minor 5ss
40.5
-1.1
2.9
49.1
41.3
Minor BPS
69.3
0.68
1.3
77.48
40

Associated Gene:

Gene:
TNRC6B
Ensembl Gene ID:
ENSAPLG00000009347
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017762
52312143 - 52387729
75587