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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_52324144_52327730_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
52324144 - 52327730
Intron Length:
3587

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGAGAA
5'SS Class:
strong_major
3'SS Sequence:
TTTAATTTTATAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTAAT
U12 Branch Point Sequence:
ACTGCTTTAATT
Flanking Amino Acid:
TTDSGPYFEKGGNHGLFGNS
Intron Amino Acid Position:
1144

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.1
0.87
0.8
76.5
26.8
Major BPS
87.2
0.92
0.9
87.6
25.6
Major PPT
82.1
0.72
0.8
76.8
37
Minor 5ss
24.3
-3
3.1
28.7
43.6
Minor BPS
69.3
0.68
1.3
77.48
40

Associated Gene:

Gene:
TNRC6B
Ensembl Gene ID:
ENSAPLG00000009347
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032152
52312143 - 52427045
114903
ENSAPLT00000026826
52312143 - 52427045
114903
ENSAPLT00000009791
52312143 - 52427045
114903
ENSAPLT00000036322
52312143 - 52427011
114869