Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_52326562_52327730_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

52326562 - 52327730

Intron Length:

1169

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTGAGAGAA

5'SS Class:

strong_major

3'SS Sequence:

ACTGCTGCTTCAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CACTAAC

U12 Branch Point Sequence:

TGTTGGCTAACT

Flanking Amino Acid:

TTDSGPYFEKLTLPFSNQDG

Intron Amino Acid Position:

1133

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

87.1

0.87

0.8

76.5

26.8

Major BPS

64.5

0.36

65.2

28.2

Major PPT

70.5

0.46

65.9

40.3

Minor 5ss

24.3

-3

3.1

28.7

43.6

Minor BPS

47.3

-0.1

2.6

77.42

44.7

Associated Gene:

Gene:

TNRC6B

Ensembl Gene ID:

ENSAPLG00000009347

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000017762

52312143 - 52387729

75587

ENSAPLT00000030062

52312143 - 52387729

75587