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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_52327880_52333709_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
52327880 - 52333709
Intron Length:
5830

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTGCGTATC
5'SS Class:
strong_major
3'SS Sequence:
CTTTTTTCTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CACTAAT
U12 Branch Point Sequence:
TTGTCACTAATT
Flanking Amino Acid:
IPGSKMDLSVGGLPDKKFEV
Intron Amino Acid Position:
1094

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.5
0.81
0.9
81.5
32.3
Major BPS
74.4
0.61
0.9
73.6
28.6
Major PPT
92.1
0.95
0.6
87.6
22.7
Minor 5ss
33.8
-1.8
3
44.9
43.1
Minor BPS
60.2
0.4
1.9
82.04
39.4

Associated Gene:

Gene:
TNRC6B
Ensembl Gene ID:
ENSAPLG00000009347
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017762
52312143 - 52387729
75587
ENSAPLT00000032152
52312143 - 52427045
114903
ENSAPLT00000009791
52312143 - 52427045
114903
ENSAPLT00000030062
52312143 - 52387729
75587
ENSAPLT00000026826
52312143 - 52427045
114903
ENSAPLT00000023148
52312143 - 52427011
114869
ENSAPLT00000036322
52312143 - 52427011
114869