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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_52333756_52335010_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
52333756 - 52335010
Intron Length:
1255

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTA|GTAAGTGAA
5'SS Class:
major
3'SS Sequence:
TTTTTTCTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
AGGTCAGAAATT
Flanking Amino Acid:
SKQFSNMGLLSQTEDIPGSK
Intron Amino Acid Position:
1079

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.3
0.67
1
73.1
31.1
Major BPS
83
0.82
0.8
82
24.9
Major PPT
97.3
1.06
0.5
96.6
11.5
Minor 5ss
33.9
-1.8
3.2
41.6
40.4
Minor BPS
41.9
-0.5
2.4
59.93
43.8

Associated Gene:

Gene:
TNRC6B
Ensembl Gene ID:
ENSAPLG00000009347
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017762
52312143 - 52387729
75587
ENSAPLT00000032152
52312143 - 52427045
114903
ENSAPLT00000009791
52312143 - 52427045
114903
ENSAPLT00000030062
52312143 - 52387729
75587
ENSAPLT00000026826
52312143 - 52427045
114903
ENSAPLT00000023148
52312143 - 52427011
114869
ENSAPLT00000036322
52312143 - 52427011
114869