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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_52336500_52340739_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
52336500 - 52340739
Intron Length:
4240

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTA|GTGAGTACA
5'SS Class:
major
3'SS Sequence:
TTCTTCTCTGAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAG
U12 Branch Point Sequence:
TCTTCTCTGAAG
Flanking Amino Acid:
PSNAPNAMKSSSKSMQDGWG
Intron Amino Acid Position:
983

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.7
0.58
1
72.2
32.1
Major BPS
72.4
0.56
1.5
71.4
45.1
Major PPT
77.6
0.62
1
79.4
26.6
Minor 5ss
32.4
-2
2.6
36.4
34.8
Minor BPS
49.5
-0.1
1.9
60.15
41.9

Associated Gene:

Gene:
TNRC6B
Ensembl Gene ID:
ENSAPLG00000009347
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026826
52312143 - 52427045
114903
ENSAPLT00000023148
52312143 - 52427011
114869
ENSAPLT00000036322
52312143 - 52427011
114869
ENSAPLT00000017762
52312143 - 52387729
75587
ENSAPLT00000032152
52312143 - 52427045
114903
ENSAPLT00000030062
52312143 - 52387729
75587