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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_52340899_52341834_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
52340899 - 52341834
Intron Length:
936

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTTGTTCC
5'SS Class:
major
3'SS Sequence:
CTCCTTTACGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATGAA
U12 Branch Point Sequence:
TTCTCCTTTACG
Flanking Amino Acid:
TPMTGKSQASVWSKSTPPAP
Intron Amino Acid Position:
930

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.4
0.6
1.2
69.6
35.5
Major BPS
67.7
0.44
1
58
38.9
Major PPT
76
0.59
0.8
72.2
31.3
Minor 5ss
43.9
-0.7
2.3
54.4
42.7
Minor BPS
72.2
0.55
1.7
75.7
42.1

Associated Gene:

Gene:
TNRC6B
Ensembl Gene ID:
ENSAPLG00000009347
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017762
52312143 - 52387729
75587
ENSAPLT00000032152
52312143 - 52427045
114903
ENSAPLT00000030062
52312143 - 52387729
75587
ENSAPLT00000026826
52312143 - 52427045
114903
ENSAPLT00000023148
52312143 - 52427011
114869
ENSAPLT00000036322
52312143 - 52427011
114869