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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_52349524_52351144_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
52349524 - 52351144
Intron Length:
1621

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAGCC
5'SS Class:
strong_major
3'SS Sequence:
CTGTTTTTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
AATTTCTGATTT
Flanking Amino Acid:
AQKVTDQKTKVPEVTKPSLS
Intron Amino Acid Position:
103

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.1
0.95
0.8
76
31.7
Major BPS
100
1.24
0.5
100
0
Major PPT
89.2
0.88
0.7
88
29.4
Minor 5ss
31.7
-2.1
3.3
42.5
44.5
Minor BPS
54.4
0.22
1.7
72.18
38.8

Associated Gene:

Gene:
TNRC6B
Ensembl Gene ID:
ENSAPLG00000009347
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009791
52312143 - 52427045
114903
ENSAPLT00000030062
52312143 - 52387729
75587
ENSAPLT00000026826
52312143 - 52427045
114903
ENSAPLT00000023148
52312143 - 52427011
114869
ENSAPLT00000036322
52312143 - 52427011
114869
ENSAPLT00000017762
52312143 - 52387729
75587
ENSAPLT00000032152
52312143 - 52427045
114903