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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_52458445_52463217_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
52458445 - 52463217
Intron Length:
4773

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAACCT
5'SS Class:
strong_major
3'SS Sequence:
CTTTTCATTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTTTTTTAACT
Flanking Amino Acid:
ASVQSADGISGNPGPNSTMS
Intron Amino Acid Position:
487

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.9
0.73
1
71.4
38.4
Major BPS
100
1.24
0.5
100
0
Major PPT
86
0.81
0.8
77.9
35.1
Minor 5ss
34
-1.8
3.3
49.1
46.6
Minor BPS
88.9
1.3
0.8
99.22
22

Associated Gene:

Gene:
FAM83F
Ensembl Gene ID:
ENSAPLG00000009665
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010058
52457267 - 52476572
19306