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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_52463931_52464469_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
52463931 - 52464469
Intron Length:
539

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGGTTGC
5'SS Class:
strong_major
3'SS Sequence:
TTCCTATTTTTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTAAT
U12 Branch Point Sequence:
TGTTTCCTATTT
Flanking Amino Acid:
DGEKVATGSYSFTWSSSHID
Intron Amino Acid Position:
249

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.8
0.73
1
69.2
38.5
Major BPS
85.7
0.89
0.8
84
22.2
Major PPT
82.5
0.73
0.7
81.3
29.5
Minor 5ss
33.7
-1.9
3.1
43.4
44.3
Minor BPS
54.2
0.21
1.9
76.98
39.8

Associated Gene:

Gene:
FAM83F
Ensembl Gene ID:
ENSAPLG00000009665
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010058
52457267 - 52476572
19306