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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_52464592_52472184_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
52464592 - 52472184
Intron Length:
7593

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTAAGATAT
5'SS Class:
strong_major
3'SS Sequence:
ACCTCCCTGCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
CGTCTATTAACC
Flanking Amino Acid:
CLDLSDLQIRNIRIRSVTGV
Intron Amino Acid Position:
209

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.5
0.79
1
77.7
33.3
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
61.7
0.26
0.9
54.6
35.9
Minor 5ss
39.2
-1.2
3.1
48.1
47.5
Minor BPS
57.4
0.21
1.6
65.58
39.6

Associated Gene:

Gene:
FAM83F
Ensembl Gene ID:
ENSAPLG00000009665
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010058
52457267 - 52476572
19306