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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_52472353_52476116_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
52472353 - 52476116
Intron Length:
3764

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGGACT
5'SS Class:
strong_major
3'SS Sequence:
TTCTTGTTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAG
U12 Branch Point Sequence:
CTTTATTTAGTT
Flanking Amino Acid:
VRDMIQQAQKIIAVAMDVFT
Intron Amino Acid Position:
153

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.9
0.75
1
76.1
39.5
Major BPS
64.7
0.37
1.5
63.7
43.9
Major PPT
87.7
0.85
0.8
80.2
37.3
Minor 5ss
33.5
-1.9
3.5
49
47
Minor BPS
57.8
0.32
1.8
76.41
40.9

Associated Gene:

Gene:
FAM83F
Ensembl Gene ID:
ENSAPLG00000009665
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010058
52457267 - 52476572
19306