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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_52501273_52502900_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
52501273 - 52502900
Intron Length:
1628

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAACACA
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTCCATCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACCTCAC
U12 Branch Point Sequence:
AAAACCTGACCT
Flanking Amino Acid:
IFLRDEREEKERRGGSLERM
Intron Amino Acid Position:
181

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.9
0.73
1
74
36.5
Major BPS
63.6
0.34
1
65.3
32.1
Major PPT
82.6
0.73
0.8
82.7
27.5
Minor 5ss
39
-1.2
2.9
49.8
46.2
Minor BPS
49.7
0.06
1.8
66.85
42.8

Associated Gene:

Gene:
GRAP2
Ensembl Gene ID:
ENSAPLG00000009697
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033424
52498418 - 52535824
37407
ENSAPLT00000026731
52498418 - 52539478
41061
ENSAPLT00000010106
52498418 - 52514971
16554