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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_52506695_52509859_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
52506695 - 52509859
Intron Length:
3165

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTGCA
5'SS Class:
strong_major
3'SS Sequence:
CTCTCTGCTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
TTTATTTCATCT
Flanking Amino Acid:
LSFQAGDLLKVLSSQEEWYK
Intron Amino Acid Position:
55

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
95.6
1.07
0.7
84.1
26.6
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
78.2
0.63
0.8
72.5
32.2
Minor 5ss
33
-1.9
3.1
41.6
45
Minor BPS
52.4
0.15
1.8
76.36
40.5

Associated Gene:

Gene:
GRAP2
Ensembl Gene ID:
ENSAPLG00000009697
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010106
52498418 - 52514971
16554
ENSAPLT00000033424
52498418 - 52535824
37407
ENSAPLT00000026731
52498418 - 52539478
41061