About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_52509963_52514912_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
52509963 - 52514912
Intron Length:
4950

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGGGGC
5'SS Class:
major
3'SS Sequence:
ATACTTCTTCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AGCTCAT
U12 Branch Point Sequence:
AAGCATATACTT
Flanking Amino Acid:
KVPEERRAATSSALPPRHSM
Intron Amino Acid Position:
20

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.9
0.7
1
64.8
41.3
Major BPS
70.9
0.52
1.1
71.4
36.6
Major PPT
79.1
0.65
0.9
70.2
40.5
Minor 5ss
35.7
-1.6
3.5
49.7
46.9
Minor BPS
39.8
-0.7
1.8
50.82
37

Associated Gene:

Gene:
GRAP2
Ensembl Gene ID:
ENSAPLG00000009697
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010106
52498418 - 52514971
16554