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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_52509963_52539118_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
52509963 - 52539118
Intron Length:
29156

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAAATA
5'SS Class:
strong_major
3'SS Sequence:
ATACTTCTTCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AGCTCAT
U12 Branch Point Sequence:
AAGCATATACTT
Flanking Amino Acid:
MHFYENKSSALPPRHSM
Intron Amino Acid Position:
8

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.6
0.82
0.9
83.2
28.3
Major BPS
70.9
0.52
1.1
71.4
36.6
Major PPT
79.1
0.65
0.9
70.2
40.5
Minor 5ss
36.4
-1.5
3.1
48.8
46.9
Minor BPS
39.8
-0.7
1.8
50.82
37

Associated Gene:

Gene:
GRAP2
Ensembl Gene ID:
ENSAPLG00000009697
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026731
52498418 - 52539478
41061