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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_52609020_52610451_R

Intron Information:

Intron Rank:
34
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
52609020 - 52610451
Intron Length:
1432

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGAAT
5'SS Class:
strong_major
3'SS Sequence:
CGCTGCTCCCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TGTGTTTTCACC
Flanking Amino Acid:
PSVNCSLLHQAPESDTSLDS
Intron Amino Acid Position:
1862

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.2
0.9
0.8
83.8
29
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
63.1
0.29
0.9
53.9
36.6
Minor 5ss
28.5
-2.5
3.1
38.7
46.6
Minor BPS
52.3
0.05
1.8
65.82
40.4

Associated Gene:

Gene:
CACNA1I
Ensembl Gene ID:
ENSAPLG00000009947
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040614
52608318 - 52689441
81124
ENSAPLT00000010411
52608318 - 52689441
81124