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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_52612038_52617076_R

Intron Information:

Intron Rank:
30
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
52612038 - 52617076
Intron Length:
5039

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGGTACA
5'SS Class:
strong_major
3'SS Sequence:
TCCCTTCCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CATTCAA
U12 Branch Point Sequence:
CATTCAATGACA
Flanking Amino Acid:
LCMRCYSPAQVQLAEMEALS
Intron Amino Acid Position:
1653

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.9
0.78
0.9
76.7
33.9
Major BPS
70.6
0.51
1
73.3
31.3
Major PPT
81.9
0.72
0.7
76.6
25.5
Minor 5ss
29.2
-2.4
2.8
33.9
41.6
Minor BPS
50.4
0.01
1.9
65.82
40

Associated Gene:

Gene:
CACNA1I
Ensembl Gene ID:
ENSAPLG00000009947
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040614
52608318 - 52689441
81124