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Intron Name: Anas_platyrhynchos_platyrhynchos_1_52616439_52617076_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

52616439 - 52617076

Intron Length:

638

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTGGGTACA

5'SS Class:

strong_major

3'SS Sequence:

TCTTGTCCCCTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTAAAAT

U12 Branch Point Sequence:

TTTCTCCCATCC

Flanking Amino Acid:

LCMRCYSPAQENLWLDSVSL

Intron Amino Acid Position:

1653

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

82.9

0.78

0.9

76.7

33.9

Major BPS

70.6

0.51

1.1

75.9

34.4

Major PPT

73.7

0.53

0.8

66.2

35.9

Minor 5ss

29.2

-2.4

2.8

33.9

41.6

Minor BPS

45.9

-0.3

64.77

40.4

Associated Gene:

Gene:

CACNA1I

Ensembl Gene ID:

ENSAPLG00000009947

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000010411

52608318 - 52689441

81124