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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_52622685_52623336_R

Intron Information:

Intron Rank:
26
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
52622685 - 52623336
Intron Length:
652

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTGAGAAAG
5'SS Class:
major
3'SS Sequence:
CTTGTTATGGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTTAT
U12 Branch Point Sequence:
TGCTTGTTATGG
Flanking Amino Acid:
RIMRVLRIARVLKLLKMATG
Intron Amino Acid Position:
1447

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.5
0.65
1
67.7
39.3
Major BPS
81.3
0.78
1.1
71.7
44.6
Major PPT
73.2
0.52
1
69.8
40.3
Minor 5ss
26.9
-2.6
2.7
23.2
36.9
Minor BPS
40.7
-0.8
2.4
46.72
46.5

Associated Gene:

Gene:
CACNA1I
Ensembl Gene ID:
ENSAPLG00000009947
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010411
52608318 - 52689441
81124
ENSAPLT00000040614
52608318 - 52689441
81124