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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_52627240_52628200_R

Intron Information:

Intron Rank:
22
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
52627240 - 52628200
Intron Length:
961

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATAAAGA
5'SS Class:
major
3'SS Sequence:
CTCCTTCCTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACTTGAC
U12 Branch Point Sequence:
CACTTGACCATT
Flanking Amino Acid:
GLDAVAVDQQPVTNNNPWML
Intron Amino Acid Position:
1251

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.8
0.56
1
66.7
38.5
Major BPS
65.1
0.38
1
57
39.5
Major PPT
81.2
0.7
0.7
72.9
32
Minor 5ss
38.3
-1.3
2.9
49.3
46.5
Minor BPS
32.1
-1.3
2.3
44.95
40.6

Associated Gene:

Gene:
CACNA1I
Ensembl Gene ID:
ENSAPLG00000009947
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040614
52608318 - 52689441
81124
ENSAPLT00000010411
52608318 - 52689441
81124