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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_52628291_52628777_R

Intron Information:

Intron Rank:
21
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
52628291 - 52628777
Intron Length:
487

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTGTG
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTGTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCACAT
U12 Branch Point Sequence:
ACCTGCTTCACA
Flanking Amino Acid:
HKYNFDNLGQALMSLFVLAS
Intron Amino Acid Position:
1221

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.7
0.98
0.7
81.3
32.8
Major BPS
77.7
0.69
1
83.3
27.7
Major PPT
89
0.88
0.8
84.5
30.4
Minor 5ss
30.9
-2.2
3.2
39.6
46.4
Minor BPS
49
-0
2.2
60.87
45.5

Associated Gene:

Gene:
CACNA1I
Ensembl Gene ID:
ENSAPLG00000009947
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040614
52608318 - 52689441
81124
ENSAPLT00000010411
52608318 - 52689441
81124