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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_52636534_52638443_R

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
52636534 - 52638443
Intron Length:
1910

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGATAG
5'SS Class:
strong_major
3'SS Sequence:
TCTTTTTACCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
TTCTTTTTACCC
Flanking Amino Acid:
DQFQEVQEGSDPKLCAIPVT
Intron Amino Acid Position:
770

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.6
0.77
0.9
70.3
36.4
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
82.7
0.74
0.8
77
36.3
Minor 5ss
43.4
-0.7
2.8
55.2
49
Minor BPS
64.1
0.42
1.6
72.92
38.9

Associated Gene:

Gene:
CACNA1I
Ensembl Gene ID:
ENSAPLG00000009947
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040614
52608318 - 52689441
81124
ENSAPLT00000010411
52608318 - 52689441
81124