Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_52650690_52655346_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

52650690 - 52655346

Intron Length:

4657

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ATC|GTAAGTATA

5'SS Class:

major

3'SS Sequence:

CCTTTGCTACTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CTGACAT

U12 Branch Point Sequence:

CCTTTGCTACTA

Flanking Amino Acid:

NFIYFILLIIVGSFFMINLC

Intron Amino Acid Position:

299

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

74.4

0.57

1.3

79.8

35.3

Major BPS

55.3

0.13

1.3

64.4

41.8

Major PPT

69.4

0.44

0.9

62.7

38.5

Minor 5ss

40.8

-1

2.8

39.1

Minor BPS

39.5

-0.8

2.3

50.29

42.1

Associated Gene:

Gene:

CACNA1I

Ensembl Gene ID:

ENSAPLG00000009947

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000040614

52608318 - 52689441

81124

ENSAPLT00000010411

52608318 - 52689441

81124