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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_52656414_52658400_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
52656414 - 52658400
Intron Length:
1987

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTGAGTGCC
5'SS Class:
major
3'SS Sequence:
TTTAACCTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
TGTTTTTTAACC
Flanking Amino Acid:
NRCFMEENFTIQGDIVLPPY
Intron Amino Acid Position:
162

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.8
0.68
1
71.3
32.2
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
81
0.7
0.9
74.1
36.1
Minor 5ss
30.9
-2.2
3.2
40.5
38.7
Minor BPS
79.9
0.92
1
82.49
30.8

Associated Gene:

Gene:
CACNA1I
Ensembl Gene ID:
ENSAPLG00000009947
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040614
52608318 - 52689441
81124
ENSAPLT00000010411
52608318 - 52689441
81124