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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_528421_570554_F

Intron Information:

Intron Rank:
2
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
528421 - 570554
Intron Length:
42134

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGAACT
5'SS Class:
strong_major
3'SS Sequence:
GTCTGCAGATAAG|C
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TACTTAG
U12 Branch Point Sequence:
AGATACTTAGTG
Flanking Amino Acid:
ILGVQRPLLQLLCRNRTSET
Intron Amino Acid Position:
115

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.2
0.78
1
78.1
36.3
Major BPS
59.7
0.24
1.5
57.6
41.3
Major PPT
48.7
-0
1.2
50.6
41.9
Minor 5ss
34.7
-1.7
3.3
49.7
46.3
Minor BPS
48.7
-0.2
1.8
52.93
41.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023384
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030366
524146 - 629157
105012