About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_52854925_52879523_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
52854925 - 52879523
Intron Length:
24599

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGGGGCT
5'SS Class:
strong_major
3'SS Sequence:
TGACGTCTTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAC
U12 Branch Point Sequence:
GTTTTTTTGACG
Flanking Amino Acid:
HISEPAGAGRGEMAGAGQRK
Intron Amino Acid Position:
47

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.3
0.71
1
73.2
34.8
Major BPS
86.5
0.91
0.8
77.4
37.4
Major PPT
72.2
0.5
1
62
44.2
Minor 5ss
30.5
-2.2
3.8
47.1
48.5
Minor BPS
69
0.45
1.3
70.47
36.9

Associated Gene:

Gene:
MIEF1
Ensembl Gene ID:
ENSAPLG00000015534
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036158
52849522 - 52879662
30141